PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122107001
Common NameGSBRNA2T00122107001, LOC106420110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 230aa    MW: 25937.5 Da    PI: 4.5061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122107001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-1882131355
                  AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+++AeIrd    + k  r++lg+f+taeeAa a+++a+ +l+g
  GSBRNA2T00122107001  82 YRGVRTRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 131
                          9****999.**********32..2.24***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.52481139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3081139IPR001471AP2/ERF domain
SMARTSM003801.8E-3681145IPR001471AP2/ERF domain
PfamPF008477.0E-1381131IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2282141IPR016177DNA-binding domain
CDDcd000187.43E-2982141No hitNo description
PRINTSPR003679.2E-118293IPR001471AP2/ERF domain
PRINTSPR003679.2E-11105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009753Biological Processresponse to jasmonic acid
GO:0009861Biological Processjasmonic acid and ethylene-dependent systemic resistance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEYQTSFFYE NQAREFSPEN SCSTNSWSSQ ESFLWEESFL HDQSFSPSYY SDDFLAFGSS  60
LIKEEEEGED TVAALEEEER SYRGVRTRPW GKYAAEIRDS TRKGIRVWLG TFDTAEEAAL  120
AYDQAAFALK GDLAVLNFPV DVVRDSLQKM EDVNLDNGES PVIALKRKHS MRNRPRGKKK  180
SPPSSSSSSS SSSRSRIQSV AMKQESTTTL VVFEDLGAEY LEELMRSCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2580142163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00023PBMTransfer from AT1G06160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122107001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9216491e-108EU921649.1 Brassica oleracea var. gemmifera ethylene-responsive factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716403.11e-168PREDICTED: ethylene-responsive transcription factor ERF094-like
SwissprotQ9LND11e-83ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBLA0A078EZ231e-168A0A078EZ23_BRANA; BnaA09g50010D protein
STRINGBra032433.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.12e-78octadecanoid-responsive Arabidopsis AP2/ERF 59
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]